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SRX23175952: GBS for Tef diversity panel (TDP-300)
1 ILLUMINA (NextSeq 500) run: 3.2M spots, 442.6M bases, 177.7Mb downloads

Design: A ddRAD-based library-preparation protocol with two restriction enzymes Pstl and Nlall was used for sequencing at the Australian Genome Research Facility (AGRF).
Submitted by: The Hebrew University of Jerusalem
Study: GBS for Tef diversity panel (TDP-300)
show Abstracthide Abstract
Tef [Eragrostis tef (Zucc.) Trotter, also known as teff] is an allotetraploid (2n = 4x = 40) C4 cereal crop, originating in Ethiopia. Tef is characterized by high grain and feed nutritional qualities, and resilience to abiotic and biotic stresses, thus it holds a great potential to sustain food and nutrition security in Africa and other parts of the world. The objective of our study was to identify genomic regions associated with major traits of interest. Tef accessions, mostly collected by the USDA in Ethiopia during the 1950s and 1960s and later stored in the Israel Plant Gene Bank, were propagated, genetically fixed via one round of single-plant selection, and subjected to GBS. A tef diversity panel (TDP-300) consisting of 297 genotypes was assembled. The data generated can facilitate studies on the genetic basis underlying major traits in tef, as well as marker-assisted breeding.
Sample:
SAMN39402924 • SRS20125244 • All experiments • All runs
Organism: Eragrostis tef
Library:
Name: RTC-91
Instrument: NextSeq 500
Strategy: GBS
Source: GENOMIC
Selection: Restriction Digest
Layout: SINGLE
Runs: 1 run, 3.2M spots, 442.6M bases, 177.7Mb
Run# of Spots# of BasesSizePublished
SRR275050563,161,110442.6M177.7Mb2024-12-19

ID:
31304711

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